Index

A

AbsorptionContribution (class in taurex.contributions.absorption) activeGases (AutoChemistry property) (Chemistry property) (MakeFreeMixin property) activeGasMixProfile (AutoChemistry property) (Chemistry property) (MakeFreeMixin property) add_active_gas_param() (ConstantGas method) add_cia() (CIACache method) add_contribution() (ForwardModel method) add_derived_param() (Fittable method) add_fittable_param() (Fittable method) add_opacity() (OpacityCache method) add_pressure_param() (TwoLayerGas method), [1] add_surface_param() (TwoLayerGas method), [1]

add_temperature() (HitranCiaGrid method) add_top_param() (TwoLayerGas method), [1] addGas() (MakeFreeMixin method) (TaurexChemistry method) albedoterm (EmissionModel property) allgather() (in module taurex.mpi) allocate_as_shared() (in module taurex.mpi) allreduce() (in module taurex.mpi) altitudeProfile (SimpleForwardModel property) AnyMixin (class in taurex.mixin.core) ArraySpectrum (class in taurex.data.spectrum.array) auto_grid() (SimpleForwardModel method) AutoChemistry (class in taurex.data.profiles.chemistry.autochemistry) availableActive (Chemistry property) averageTemperature (TemperatureProfile property)

B

barrier() (in module taurex.mpi) BaseSpectrum (class in taurex.data.spectrum.spectrum) BIBTEX_ENTRIES (Citable attribute) (ExoTransmitOpacity attribute) (Guillot2010 attribute) (HDF5Opacity attribute) (LeeMieContribution attribute) (MultiNestOptimizer attribute) (NestleOptimizer attribute) (PhoenixStar attribute) (RayleighContribution attribute) (Rodgers2000 attribute) (TwoLayerGas attribute), [1] bin_model() (Binner method) (NativeBinner method) bindown() (Binner method) (FluxBinner method) (in module taurex.util) (in module taurex.util.util) (LightcurveBinner method) (NativeBinner method) (SimpleBinner method) binEdges (ArraySpectrum property) (BaseSpectrum property) (ObservedLightCurve property) binned_spectrum (BinnedSpectrumType attribute)

binned_tau (BinnedSpectrumType attribute) binned_wlgrid (BinnedSpectrumType attribute) binned_wlwidth (BinnedSpectrumType attribute) binned_wngrid (BinnedSpectrumType attribute) binned_wnwidth (BinnedSpectrumType attribute) BinnedSpectrumType (class in taurex.binning.binner) Binner (class in taurex.binning.binner) binWidths (ArraySpectrum property) (BaseSpectrum property) (ObservedLightCurve property) black_body() (in module taurex.util.emission) black_body_numba() (in module taurex.util.emission) black_body_numba_II() (in module taurex.util.emission) black_body_numexpr() (in module taurex.util.emission) black_body_numpy() (in module taurex.util.emission) BlackbodyStar (class in taurex.data.stellar.star) boundaries (FitParam property) boundaries() (Gaussian method) (Prior method) (Uniform method) bounds (FitParam attribute) broadcast() (in module taurex.mpi) build() (Contribution method) (ForwardModel method) (SimpleForwardModel method) build_new_mixed_class() (in module taurex.mixin.core)

C

calculate_weight() (in module taurex.util) (in module taurex.util.util) check_profile() (NPoint method) Chemistry (class in taurex.data.profiles.chemistry.chemistry) chemistry (SimpleForwardModel property) ChemistryMixin (class in taurex.mixin.core) chisq_trans() (Optimizer method) CIA (class in taurex.cia.cia) cia() (CIA method) CIACache (class in taurex.cache.ciaacache) CIAContribution (class in taurex.contributions.cia) ciaPairs (CIAContribution property) Citable (class in taurex.data.citation) citations() (Citable method) (ForwardModel method) (HDF5Opacity method) (SimpleForwardModel method) (TaurexChemistry method) class_for_name() (in module taurex.util) (in module taurex.util.util) class_from_keyword() (in module taurex.util) (in module taurex.util.util) clean_molecule_name() (PickleOpacity method) cleanup_string() (in module taurex.data.citation) clear_cache() (OpacityCache method) clip_native_to_wngrid() (in module taurex.util) (in module taurex.util.util) close() (HDF5Output method), [1] (Output method), [1] cloudsPressure (SimpleCloudsContribution property) collect_derived_parameters() (SimpleForwardModel method) collect_fitting_parameters() (SimpleForwardModel method) combine_variance() (OnlineVariance method) compatible() (Mixin class method) compile_fitparams() (Fittable method) compile_params() (in module taurex.optimizer.optimizer) (Optimizer method) compute (DerivedCallable attribute) (DerivedParam attribute) compute_absorption() (TransmissionModel method) compute_bin_edges() (in module taurex.util) (in module taurex.util.util) compute_cia() (CIA method) (HitranCIA method) (PickleCIA method) compute_derived_trace() (Optimizer method) compute_direct_image_final_flux() (in module taurex.model.directimage) compute_dz() (in module taurex.util) (in module taurex.util.util) compute_elements_mix() (TaurexChemistry method) compute_error() (ForwardModel method) (SimpleForwardModel method) compute_final_flux() (DirectImageModel method) (EmissionModel method) compute_final_grid() (HitranCIA method) compute_fit() (MultiNestOptimizer method) (NestleOptimizer method) (Optimizer method) compute_logg() (PhoenixStar method)

compute_mu_profile() (AutoChemistry method) (Chemistry method) (MakeFreeMixin method) compute_opacity() (InterpolatingOpacity method) (Opacity method) compute_path_length() (TransmissionModel method) compute_path_length_old() (TransmissionModel method) compute_pressure_profile() (PressureProfile method) (SimplePressureProfile method) compute_rayleigh_cross_section() (in module taurex.util.math) condensateMixProfile (Chemistry property) condensates (Chemistry property) ConfigType (class in taurex.parameter.factory) ConstantGas (class in taurex.data.profiles.chemistry.gas.constantgas) construct_nice_printable_string() (in module taurex.data.citation) contribute() (AbsorptionContribution method) (CIAContribution method) (Contribution method) (LeeMieContribution method) (SimpleCloudsContribution method) contribute_cia() (in module taurex.contributions.cia) contribute_cia_numba() (in module taurex.contributions.cia) contribute_cia_numpy() (in module taurex.contributions.cia) contribute_ktau_emission() (in module taurex.model.emission) contribute_ktau_emission_numba() (in module taurex.model.emission) contribute_ktau_emission_numpy() (in module taurex.model.emission) contribute_tau() (in module taurex.contributions.contribution) contribute_tau_numba() (in module taurex.contributions.contribution) contribute_tau_numpy() (in module taurex.contributions.contribution) Contribution (class in taurex.contributions.contribution) ContributionMixin (class in taurex.mixin.core) conversion_factor() (in module taurex.util) (in module taurex.util.util) convert_op() (in module taurex.mpi) correlate_temp() (Rodgers2000 method) correlationLength (Rodgers2000 property) covariance (NestleSolutionOutput attribute) create_binner() (BaseSpectrum method) (ObservedLightCurve method) create_chemistry() (in module taurex.parameter.factory) create_generic() (in module taurex.parameter.factory) create_grid_res() (in module taurex.util) (in module taurex.util.util) create_group() (HDF5OutputGroup method) (OutputGroup method), [1] create_instrument() (in module taurex.parameter.factory) create_klass() (in module taurex.parameter.factory) create_manual_binning() (ParameterParser method), [1] create_model() (in module taurex.parameter.factory) create_observation() (in module taurex.parameter.factory) create_optimizer() (in module taurex.parameter.factory) create_planet() (in module taurex.parameter.factory) create_pressure_profile() (in module taurex.parameter.factory) create_prior() (in module taurex.parameter.factory) create_snr() (ParameterParser method), [1] create_spectrum() (in module taurex.parameter.factory) create_star() (in module taurex.parameter.factory) create_temperature_profile() (in module taurex.parameter.factory) critical() (Loggable method), [1]

D

debug() (Loggable method), [1] decode_string_array() (in module taurex.util) (in module taurex.util.util) decorated (DerivedCallable attribute) (FittingCallable attribute) default_bounds (FittingCallable attribute) default_fit (FittingCallable attribute) default_mode (FittingCallable attribute) defaultBinner() (ForwardModel method) densityProfile (SimpleForwardModel property) derived_latex (Optimizer property) derived_names (Optimizer property) derived_parameters (Optimizer property) derived_parameters() (Fittable method) derived_values (Optimizer property) DerivedCallable (class in taurex.data.fittable) DerivedParam (class in taurex.optimizer.optimizer) derivedparam() (in module taurex.data.fittable)

derivedParameters (BaseSpectrum property) (ForwardModel property) DerivedPropertyType (class in taurex.data.fittable) detect_and_return_klass() (in module taurex.parameter.factory) determine_active_inactive() (AutoChemistry method) determine_klass() (in module taurex.parameter.factory) determine_mixin_args() (in module taurex.mixin.core) determine_new_mix_mask() (MakeFreeMixin method) DirectImageModel (class in taurex.model.directimage) disable_derived() (Optimizer method) disable_fit() (Optimizer method) disableLogging() (in module taurex.log) discover() (ExoTransmitOpacity class method) (HDF5Opacity class method) (Opacity class method) (PickleOpacity class method) distanceSystem (Star property) doc (FittingCallable attribute) doi_to_bibtex() (in module taurex.data.citation)

E

EmissionModel (class in taurex.model.emission) emit() (TauRexHandler method) enable_derived() (Optimizer method) enable_fit() (Optimizer method) enable_radis() (OpacityCache method) enableLogging() (in module taurex.log) EndOfHitranCIAError enhance_class() (in module taurex.mixin.core) ensure_string_utf8() (in module taurex.util) (in module taurex.util.util)

equilTemperature (Guillot2010 property) error() (Loggable method), [1] error_and_raise() (Loggable method), [1] errorBar (ArraySpectrum property) (BaseSpectrum property) (ObservedLightCurve property) evaluate_emission() (EmissionModel method) evaluate_emission_ktables() (EmissionModel method) ExoTransmitOpacity (class in taurex.opacity.exotransmit)

F

fdel (FittingCallable attribute) fget (DerivedCallable attribute) (DerivedParam attribute) (DerivedPropertyType attribute) (FitParam attribute) (FitPropertyType attribute) (FittingCallable attribute) fill_atmosphere() (TaurexChemistry method) fill_gaps() (HitranCIA method) fill_temperature() (HitranCiaGrid method) finalize() (AbsorptionContribution method) (Contribution method) find_closest_index() (InterpolatingOpacity method) find_closest_pair() (in module taurex.util) (in module taurex.util.util) find_closest_temperature_index() (HitranCIA method) (HitranCiaGrid method) (PickleCIA method) find_derivedparams() (Fittable method) find_fitparams() (Fittable method) find_list_of_molecules() (OpacityCache method) find_mapped_mixin() (in module taurex.mixin.core) find_nearest_file() (PhoenixStar method) fit() (Optimizer method) fit_boundaries (Optimizer property) fit_latex (FitParam property) (Optimizer property)

fit_name (FitParam property) fit_names (Optimizer property) fit_prior (FitParam property) fit_value (FitParam property) fit_values (Optimizer property) fit_values_nomode (Optimizer property) FitParam (class in taurex.optimizer.optimizer) fitparam() (in module taurex.data.fittable) FitParamOutput (class in taurex.optimizer.optimizer) fitparams (NestleSolutionOutput attribute) FitPropertyType (class in taurex.data.fittable) Fittable (class in taurex.data.fittable) fitting_parameters (Optimizer property) fitting_parameters() (Fittable method) (MakeFreeMixin method) (TaurexChemistry method) fitting_priors (Optimizer property) FittingCallable (class in taurex.data.fittable) fittingParameters (BaseSpectrum property) (ForwardModel property) FlatMieContribution (class in taurex.contributions.flatmie) FluxBinner (class in taurex.binning.fluxbinner) force_active() (OpacityCache method) ForwardModel (class in taurex.model.model) ForwardModelMixin (class in taurex.mixin.core) fset (FitParam attribute) (FitPropertyType attribute) (FittingCallable attribute)

G

Gas (class in taurex.data.profiles.chemistry.gas.gas) gases (AutoChemistry property) (Chemistry property) (MakeFreeMixin property) (TaurexChemistry property) GasMixin (class in taurex.mixin.core) Gaussian (class in taurex.core.priors) gen_covariance() (Rodgers2000 method) generate_appropriate_model() (ParameterParser method), [1] generate_binning() (ParameterParser method), [1] generate_chemistry_profile() (ParameterParser method), [1] generate_contributions() (in module taurex.parameter.factory) generate_derived_parameters() (ParameterParser method), [1] generate_fitting_parameters() (ParameterParser method), [1] generate_instrument() (ParameterParser method), [1] generate_lightcurve() (ParameterParser method), [1] generate_model() (ParameterParser method), [1] generate_observation() (ParameterParser method), [1] generate_optimizer() (ParameterParser method), [1] generate_planet() (ParameterParser method), [1] generate_pressure_fitting_params() (NPoint method) generate_pressure_profile() (ParameterParser method), [1] generate_profiles() (ForwardModel method) (Optimizer method) (SimpleForwardModel method) generate_solution() (MultiNestOptimizer method) (Optimizer method) generate_spectrum_output() (Binner method) (FluxBinner method) (LightcurveBinner method) (NativeBinner method) (SimpleBinner method)

generate_star() (ParameterParser method), [1] generate_temperature_fitting_params() (NPoint method) (Rodgers2000 method) generate_temperature_profile() (ParameterParser method), [1] generic_factory() (in module taurex.parameter.factory) get_avail_phoenix() (PhoenixStar method) get_condensate_mix_profile() (Chemistry method) get_element_ratio() (TaurexChemistry method) get_gas_mix_profile() (Chemistry method) get_keywordarg_dict() (in module taurex.parameter.factory) get_metallicity() (TaurexChemistry method) get_molecular_mass() (Chemistry method) get_molecular_weight() (in module taurex.util) (in module taurex.util.util) get_rank() (in module taurex.mpi) get_samples() (MultiNestOptimizer method) (NestleOptimizer method) (Optimizer method) get_solution() (MultiNestOptimizer method) (NestleOptimizer method) (Optimizer method) get_weights() (MultiNestOptimizer method) (NestleOptimizer method) (Optimizer method) Guillot2010 (class in taurex.data.profiles.temperature.guillot)

H

handle_publication() (in module taurex.data.citation) handle_pybtex() (HDF5Opacity method) has_duplicates() (in module taurex.util) (in module taurex.util.util) has_mpi() (in module taurex.mpi) hasCondensates (Chemistry property)

hashwn() (in module taurex.cia.hitrancia) HDF5Opacity (class in taurex.opacity.hdf5opacity) HDF5Output (class in taurex.output) (class in taurex.output.hdf5) HDF5OutputGroup (class in taurex.output.hdf5) HitranCIA (class in taurex.cia.hitrancia) HitranCiaGrid (class in taurex.cia.hitrancia)

I

inactiveGases (AutoChemistry property) (Chemistry property) (MakeFreeMixin property) inactiveGasMixProfile (AutoChemistry property) (Chemistry property) (MakeFreeMixin property) info() (Loggable method), [1] init() (CIACache method) (OpacityCache method) (Singleton method) initialize() (PhoenixStar method) (Star method) initialize_chemistry() (Chemistry method) (MakeFreeMixin method) (TaurexChemistry method) initialize_profile() (ConstantGas method) (Gas method) (TemperatureProfile method) (TwoLayerGas method), [1] initialize_profiles() (ForwardModel method) (SimpleForwardModel method) input_keywords() (AbsorptionContribution class method) (ArraySpectrum class method) (BaseSpectrum class method) (BlackbodyStar class method) (Chemistry class method) (CIAContribution class method) (ConstantGas class method) (Contribution class method) (DirectImageModel class method) (EmissionModel class method) (FlatMieContribution class method) (ForwardModel class method) (Guillot2010 class method) (Instrument class method) (IraclisSpectrum class method) (Isothermal class method) (LeeMieContribution class method) (MakeFreeMixin class method) (Mixin class method) (MultiNestOptimizer class method) (NestleOptimizer class method) (NPoint class method) (ObservedLightCurve class method) (ObservedSpectrum class method) (Optimizer class method) (PhoenixStar class method) (RayleighContribution class method) (Rodgers2000 class method) (SimpleCloudsContribution class method) (SimplePressureProfile class method) (SNRInstrument class method) (Star class method) (TaurexChemistry class method) (TemperatureArray class method) (TemperatureFile class method) (TemperatureProfile class method) (TempScaler class method) (TransmissionModel class method) (TwoLayerGas class method), [1]

Instrument (class in taurex.instruments.instrument) InstrumentMixin (class in taurex.mixin.core) integrate_emission_layer() (in module taurex.util.emission) intepr_bilin() (in module taurex.util.math) intepr_bilin_double() (in module taurex.util.math) intepr_bilin_numexpr() (in module taurex.util.math) intepr_bilin_old() (in module taurex.util.math) internalTemperature (Guillot2010 property) interp_bilin_numpy() (in module taurex.util.math) interp_bilinear_grid() (InterpolatingOpacity method) interp_exp_and_lin() (in module taurex.util.math) interp_exp_and_lin_numpy() (in module taurex.util.math) interp_exp_numpy() (in module taurex.util.math) interp_exp_only() (in module taurex.util.math) interp_lin_numpy() (in module taurex.util.math) interp_lin_only() (in module taurex.util.math) interp_linear_grid() (HitranCIA method) (HitranCiaGrid method) (PickleCIA method) interp_pressure_only() (InterpolatingOpacity method) interp_temp_only() (InterpolatingOpacity method) InterpolatingOpacity (class in taurex.opacity.interpolateopacity) InvalidChemistryException InvalidTemperatureException IraclisSpectrum (class in taurex.data.spectrum.iraclis) isActive() (TaurexChemistry method) isoTemperature (Isothermal property) Isothermal (class in taurex.data.profiles.temperature.isothermal)

K

KLASS_COMPAT (AnyMixin attribute) (ChemistryMixin attribute) (ContributionMixin attribute) (ForwardModelMixin attribute) (GasMixin attribute) (InstrumentMixin attribute) (Mixin attribute) (OptimizerMixin attribute) (PlanetMixin attribute) (PressureMixin attribute) (SpectrumMixin attribute) (StarMixin attribute) (TemperatureMixin attribute)

L

latex (DerivedParam attribute) (FitParam attribute) LeeMieContribution (class in taurex.contributions.leemie) LightcurveBinner (class in taurex.binning.lightcurvebinner) LINEAR (PriorMode attribute) load_cia() (CIACache method) load_cia_from_path() (CIACache method) load_hitran_file() (HitranCIA method) load_opacity() (OpacityCache method) load_opacity_from_path() (OpacityCache method) loadtxt2d() (in module taurex.util) (in module taurex.util.util)

LOG (PriorMode attribute) log_likelihood() (Optimizer method) logBolometricFlux (EmissionModel property) LogEvidence (NestleStatsOutput attribute) LogEvidenceError (NestleStatsOutput attribute) Loggable (class in taurex.log) (class in taurex.log.logger) LogGaussian (class in taurex.core.priors) Logger (in module taurex.log) logPressure (InterpolatingOpacity property) LogUniform (class in taurex.core.priors)

M

MakeFreeMixin (class in taurex.mixin.mixins) manual_binning() (ArraySpectrum method) map (FitParamOutput attribute) mass (PhoenixStar property) (Star property) MAX (Ops attribute) maxAtmospherePressure (SimplePressureProfile property) mean (FitParamOutput attribute) meanInfraOpacity (Guillot2010 property) meanOpticalOpacity1 (Guillot2010 property) meanOpticalOpacity2 (Guillot2010 property) merge_elements() (in module taurex.util) (in module taurex.util.util) MetadataType (in module taurex.output.output) metallicity (TaurexChemistry property) mieBottomPressure (FlatMieContribution property) (LeeMieContribution property) mieMixing (FlatMieContribution property) (LeeMieContribution property) mieQ (LeeMieContribution property) mieRadius (LeeMieContribution property) mieTopPressure (FlatMieContribution property) (LeeMieContribution property) MIN (Ops attribute) minAtmospherePressure (SimplePressureProfile property) mixed_init() (in module taurex.mixin.core) Mixin (class in taurex.mixin.core) MixinProtocol (class in taurex.mixin.core) mixProfile (AutoChemistry property) (Chemistry property) (ConstantGas property) (Gas property) (TaurexChemistry property) (TwoLayerGas property), [1] mixRatioPressure (TwoLayerGas property), [1] mixRatioSmoothing (TwoLayerGas property), [1] mixRatioSurface (TwoLayerGas property), [1] mixRatioTop (TwoLayerGas property), [1] mode (FitParam attribute) model() (ForwardModel method) (SimpleForwardModel method) model_contrib() (ForwardModel method) (SimpleForwardModel method) model_full_contrib() (ForwardModel method) (SimpleForwardModel method) model_noise() (Instrument method) (SNRInstrument method) modify_bounds() (Fittable method) module taurex.binning.binner taurex.binning.fluxbinner taurex.binning.lightcurvebinner taurex.binning.nativebinner taurex.binning.simplebinner taurex.cache.ciaacache taurex.cache.opacitycache taurex.cache.singleton taurex.cia.cia taurex.cia.hitrancia taurex.cia.picklecia taurex.contributions.cia taurex.contributions.contribution taurex.contributions.flatmie taurex.contributions.leemie taurex.contributions.rayleigh taurex.contributions.simpleclouds taurex.core.priors taurex.data.citation taurex.data.fittable taurex.data.profiles.chemistry.autochemistry taurex.data.profiles.chemistry.chemistry taurex.data.profiles.chemistry.gas.constantgas taurex.data.profiles.chemistry.gas.gas taurex.data.profiles.chemistry.gas.twolayergas, [1] taurex.data.profiles.chemistry.taurexchemistry taurex.data.profiles.temperature.file taurex.data.profiles.temperature.guillot taurex.data.profiles.temperature.isothermal taurex.data.profiles.temperature.npoint taurex.data.profiles.temperature.rodgers taurex.data.profiles.temperature.temparray taurex.data.profiles.temperature.tprofile taurex.data.spectrum.array taurex.data.spectrum.iraclis taurex.data.spectrum.lightcurve taurex.data.spectrum.observed taurex.data.spectrum.spectrum taurex.data.spectrum.taurex taurex.data.stellar.phoenix taurex.instruments.instrument taurex.instruments.snr taurex.log taurex.log.logger taurex.mixin.core taurex.mixin.mixins taurex.model.directimage taurex.model.emission taurex.model.model taurex.model.simplemodel taurex.model.transmission taurex.mpi taurex.opacity.exotransmit taurex.opacity.hdf5opacity taurex.opacity.interpolateopacity taurex.opacity.opacity taurex.opacity.pickleopacity taurex.optimizer.multinest taurex.optimizer.nestle taurex.optimizer.optimizer taurex.output taurex.output.hdf5 taurex.output.output taurex.output.writeable taurex.parameter taurex.parameter.factory taurex.parameter.parameterparser taurex.util taurex.util.emission taurex.util.math taurex.util.util

molecule (Gas property) molecule_texlabel() (in module taurex.util) (in module taurex.util.util) moleculeName (ExoTransmitOpacity property) (HDF5Opacity property) (Opacity property) (PickleOpacity property) movingaverage() (in module taurex.util) (in module taurex.util.util) mu (Chemistry property) MultiNestOptimizer (class in taurex.optimizer.multinest) muProfile (Chemistry property) (MakeFreeMixin property)

N

name (Contribution property) (DerivedParam attribute) (FitParam attribute) native_spectrum (BinnedSpectrumType attribute) native_tau (BinnedSpectrumType attribute) native_wlgrid (BinnedSpectrumType attribute) native_wlwidth (BinnedSpectrumType attribute) native_wngrid (BinnedSpectrumType attribute) native_wnwidth (BinnedSpectrumType attribute) NativeBinner (class in taurex.binning.nativebinner) nativeWavenumberGrid (SimpleForwardModel property) NestFitParam (class in taurex.optimizer.multinest) NestleOptimizer (class in taurex.optimizer.nestle)

NestleSolutionOutput (class in taurex.optimizer.nestle) NestleStatsOutput (class in taurex.optimizer.nestle) NestMarginalOutput (class in taurex.optimizer.multinest) NestModeStatsOutput (class in taurex.optimizer.multinest) NestOutputType (class in taurex.optimizer.multinest) NestSolutionOutput (class in taurex.optimizer.multinest) NestStatsOutput (class in taurex.optimizer.multinest) nice_citation() (Citable method) nLayers (PressureProfile property) (SimpleForwardModel property) nLevels (PressureProfile property) NPoint (class in taurex.data.profiles.temperature.npoint) nprocs() (in module taurex.mpi) numLivePoints (NestleOptimizer property)

O

ObservationMixin (class in taurex.mixin.core) ObservedLightCurve (class in taurex.data.spectrum.lightcurve) ObservedSpectrum (class in taurex.data.spectrum.observed) OneDForwardModel (class in taurex.model.simplemodel) OnlineVariance (class in taurex.util.math) only_master_rank() (in module taurex.mpi) Opacity (class in taurex.opacity.opacity) opacity() (Opacity method) OpacityCache (class in taurex.cache.opacitycache) opacityCitation() (HDF5Opacity method) (Opacity method)

open() (HDF5Output method), [1] (Output method), [1] Ops (class in taurex.mpi) opticalRatio (Guillot2010 property) Optimizer (class in taurex.optimizer.optimizer) OptimizerMixin (class in taurex.mixin.core) order (Contribution property) (SimpleCloudsContribution property) Output (class in taurex.output) (class in taurex.output.output) OutputGroup (class in taurex.output) (class in taurex.output.output)

P

pairName (CIA property) pairOne (CIA property) pairTwo (CIA property) parallelVariance() (OnlineVariance method) param_latex (DerivedCallable attribute) (FittingCallable attribute) param_name (DerivedCallable attribute) (FittingCallable attribute) ParameterParser (class in taurex.parameter) (class in taurex.parameter.parameterparser) params() (Gaussian method) (Prior method) (Uniform method) partial_model() (EmissionModel method) path_integral() (EmissionModel method) (SimpleForwardModel method) (TransmissionModel method) Peakiness (NestleStatsOutput attribute) PhoenixStar (class in taurex.data.stellar.phoenix) PickleCIA (class in taurex.cia.picklecia) PickleOpacity (class in taurex.opacity.pickleopacity) planet (SimpleForwardModel property) PlanetMixin (class in taurex.mixin.core) prepare() (AbsorptionContribution method) (Contribution method) prepare_each() (AbsorptionContribution method) (CIAContribution method) (Contribution method) (FlatMieContribution method) (LeeMieContribution method) (RayleighContribution method) (SimpleCloudsContribution method)

pressure (SimpleForwardModel property) pressureBounds (InterpolatingOpacity property) pressureGrid (ExoTransmitOpacity property) (HDF5Opacity property) (Opacity property) (PickleOpacity property) pressureMax (InterpolatingOpacity property) pressureMin (InterpolatingOpacity property) PressureMixin (class in taurex.mixin.core) PressureProfile (class in taurex.data.profiles.pressure.pressureprofile) pressureProfile (SimpleForwardModel property) pressureSurface (NPoint property) pressureTop (NPoint property) Prior (class in taurex.core.priors) prior (FitParam attribute) prior() (Prior method) prior_transform() (Optimizer method) priority() (HDF5Opacity class method) (Opacity class method) PriorMode (class in taurex.core.priors) priorMode (Prior property) PROD (Ops attribute) profile (Guillot2010 property) (Isothermal property) (NPoint property) (PressureProfile property) (Rodgers2000 property) (SimplePressureProfile property) (TemperatureArray property) (TemperatureProfile property) (TempScaler property) profile_type (ConfigType attribute) python_file (ConfigType attribute)

Q

quantile_corner() (in module taurex.util) (in module taurex.util.util)

R

radius (Star property) random_int_iter() (in module taurex.util) (in module taurex.util.util) rawData (ArraySpectrum property) (BaseSpectrum property) (ObservedLightCurve property) RayleighContribution (class in taurex.contributions.rayleigh) read() (ParameterParser method), [1] read_error_into_dict() (in module taurex.util) (in module taurex.util.util) read_error_line() (in module taurex.util) (in module taurex.util.util) read_header() (HitranCIA method)

read_spectra() (PhoenixStar method) read_table() (in module taurex.util) (in module taurex.util.util) recompute_spectra() (PhoenixStar method) recurse_bibtex() (in module taurex.data.citation) recursively_save_dict_contents_to_output() (in module taurex.util) (in module taurex.util.util) reset() (OnlineVariance method) resolution (ExoTransmitOpacity property) (HDF5Opacity property) (Opacity property) (PickleOpacity property) Rodgers2000 (class in taurex.data.profiles.temperature.rodgers)

S

sample() (Gaussian method) (Prior method) (Uniform method) sample_parameters() (Optimizer method) samples (NestleSolutionOutput attribute) sampleVariance (OnlineVariance property) sanitize_molecule_string() (in module taurex.util) (in module taurex.util.util) scaleFactor (TempScaler property) set_boundary() (Optimizer method) set_bounds() (Uniform method) set_cia_path() (CIACache method) set_factor_boundary() (Optimizer method) set_interpolation() (OpacityCache method) set_interpolation_mode() (InterpolatingOpacity method) set_memory_mode() (OpacityCache method) set_mode() (Optimizer method) set_model() (Optimizer method) set_native_grid() (SimpleForwardModel method) set_num_gauss() (EmissionModel method) set_observed() (Optimizer method) set_opacity_path() (OpacityCache method) set_prior() (Optimizer method) set_quadratures() (EmissionModel method) set_radis_wavenumber() (OpacityCache method) set_star_planet() (Chemistry method) setLogLevel() (in module taurex.log) setup_derived_params() (TaurexChemistry method) setup_fill_params() (TaurexChemistry method) setup_globals() (ParameterParser method), [1] setup_log() (in module taurex.log) (in module taurex.log.logger) setup_optimizer() (ParameterParser method), [1]

shared_comm() (in module taurex.mpi) shared_rank() (in module taurex.mpi) sigma (AbsorptionContribution property) (Contribution property) (FitParamOutput attribute) (HitranCiaGrid property) sigma_m (FitParamOutput attribute) sigma_p (FitParamOutput attribute) SimpleBinner (class in taurex.binning.simplebinner) SimpleCloudsContribution (class in taurex.contributions.simpleclouds) SimpleForwardModel (class in taurex.model.simplemodel) SimplePressureProfile (class in taurex.data.profiles.pressure.pressureprofile) Singleton (class in taurex.cache.singleton) SNRInstrument (class in taurex.instruments.snr) sortTempSigma() (HitranCiaGrid method) spectralEmissionDensity (PhoenixStar property) (Star property) spectrum (ArraySpectrum property) (BaseSpectrum property) (ObservedLightCurve property) SpectrumMixin (class in taurex.mixin.core) split_molecule_elements() (in module taurex.util) (in module taurex.util.util) Star (class in taurex.data.stellar.star) star (SimpleForwardModel property) StarMixin (class in taurex.mixin.core) store_dictionary() (Output method), [1] (OutputGroup method), [1] store_nest_solutions() (MultiNestOptimizer method) store_nestle_output() (NestleOptimizer method) store_thing() (in module taurex.util) (in module taurex.util.util) stringify_people() (in module taurex.data.citation) SUM (Ops attribute)

T

T (class in taurex.data.fittable) taurex.binning.binner module taurex.binning.fluxbinner module taurex.binning.lightcurvebinner module taurex.binning.nativebinner module taurex.binning.simplebinner module taurex.cache.ciaacache module taurex.cache.opacitycache module taurex.cache.singleton module taurex.cia.cia module taurex.cia.hitrancia module taurex.cia.picklecia module taurex.contributions.cia module taurex.contributions.contribution module taurex.contributions.flatmie module taurex.contributions.leemie module taurex.contributions.rayleigh module taurex.contributions.simpleclouds module taurex.core.priors module taurex.data.citation module taurex.data.fittable module taurex.data.profiles.chemistry.autochemistry module taurex.data.profiles.chemistry.chemistry module taurex.data.profiles.chemistry.gas.constantgas module taurex.data.profiles.chemistry.gas.gas module taurex.data.profiles.chemistry.gas.twolayergas module, [1] taurex.data.profiles.chemistry.taurexchemistry module taurex.data.profiles.temperature.file module taurex.data.profiles.temperature.guillot module taurex.data.profiles.temperature.isothermal module taurex.data.profiles.temperature.npoint module taurex.data.profiles.temperature.rodgers module taurex.data.profiles.temperature.temparray module taurex.data.profiles.temperature.tprofile module taurex.data.spectrum.array module taurex.data.spectrum.iraclis module taurex.data.spectrum.lightcurve module taurex.data.spectrum.observed module taurex.data.spectrum.spectrum module taurex.data.spectrum.taurex module taurex.data.stellar.phoenix module taurex.instruments.instrument module taurex.instruments.snr module taurex.log module taurex.log.logger module

taurex.mixin.core module taurex.mixin.mixins module taurex.model.directimage module taurex.model.emission module taurex.model.model module taurex.model.simplemodel module taurex.model.transmission module taurex.mpi module taurex.opacity.exotransmit module taurex.opacity.hdf5opacity module taurex.opacity.interpolateopacity module taurex.opacity.opacity module taurex.opacity.pickleopacity module taurex.optimizer.multinest module taurex.optimizer.nestle module taurex.optimizer.optimizer module taurex.output module taurex.output.hdf5 module taurex.output.output module taurex.output.writeable module taurex.parameter module taurex.parameter.factory module taurex.parameter.parameterparser module taurex.util module taurex.util.emission module taurex.util.math module taurex.util.util module TaurexChemistry (class in taurex.data.profiles.chemistry.taurexchemistry) TauRexHandler (class in taurex.log.logger) TaurexSpectrum (class in taurex.data.spectrum.taurex) temperature (HitranCiaGrid property) (PhoenixStar property) (SimpleForwardModel property) (Star property) TemperatureArray (class in taurex.data.profiles.temperature.temparray) temperatureBounds (InterpolatingOpacity property) TemperatureFile (class in taurex.data.profiles.temperature.file) temperatureGrid (CIA property) (ExoTransmitOpacity property) (HDF5Opacity property) (HitranCIA property) (Opacity property) (PickleCIA property) (PickleOpacity property) temperatureMax (InterpolatingOpacity property) temperatureMin (InterpolatingOpacity property) TemperatureMixin (class in taurex.mixin.core) TemperatureProfile (class in taurex.data.profiles.temperature.tprofile) temperatureProfile (SimpleForwardModel property) temperatureSurface (NPoint property) temperatureTop (NPoint property) TempScaler (class in taurex.mixin.mixins) test_nan() (in module taurex.util.math) to_bibtex() (in module taurex.data.citation) to_fit (FitParam attribute) tokenize_molecule() (in module taurex.util) (in module taurex.util.util) tolerance (NestleOptimizer property) trace (FitParamOutput attribute) transform() (ParameterParser method), [1] TransmissionModel (class in taurex.model.transmission) TwoLayerGas (class in taurex.data.profiles.chemistry.gas.twolayergas), [1] type (ConfigType attribute)

U

Uniform (class in taurex.core.priors) unique_citations_only() (in module taurex.data.citation)

update() (OnlineVariance method) update_model() (Optimizer method) usingKTables (EmissionModel property)

V

value (FitParam property) (FitParamOutput attribute)

variance (OnlineVariance property)

W

WARN (SimpleForwardModel attribute) (SimplePressureProfile attribute) warning() (Loggable method), [1] wavelengthGrid (ArraySpectrum property) (BaseSpectrum property) (ObservedLightCurve property) wavenumberGrid (ArraySpectrum property) (BaseSpectrum property) (CIA property) (ExoTransmitOpacity property) (HDF5Opacity property) (HitranCIA property) (Opacity property) (PickleCIA property) (PickleOpacity property) weighted_avg_and_std() (in module taurex.util) (in module taurex.util.util) weights (NestleSolutionOutput attribute) wnwidth_to_wlwidth() (in module taurex.util) (in module taurex.util.util) write() (BaseSpectrum method) (Chemistry method) (CIAContribution method) (ConstantGas method) (Contribution method) (EmissionModel method) (FlatMieContribution method) (ForwardModel method) (Gas method) (Guillot2010 method) (Isothermal method) (LeeMieContribution method) (NPoint method) (ObservedLightCurve method) (Optimizer method) (PhoenixStar method) (PressureProfile method) (Rodgers2000 method) (SimpleCloudsContribution method) (SimpleForwardModel method) (SimplePressureProfile method) (Star method) (TaurexChemistry method) (TemperatureArray method) (TemperatureProfile method) (TwoLayerGas method), [1] (Writeable method), [1]

write_array() (HDF5OutputGroup method) (OutputGroup method), [1] write_fit() (MultiNestOptimizer method) (NestleOptimizer method) (Optimizer method) write_list() (OutputGroup method), [1] write_optimizer() (MultiNestOptimizer method) (NestleOptimizer method) (Optimizer method) write_scalar() (HDF5OutputGroup method) (OutputGroup method), [1] write_string() (HDF5OutputGroup method) (OutputGroup method), [1] write_string_array() (HDF5OutputGroup method) (OutputGroup method), [1] Writeable (class in taurex.output) (class in taurex.output.writeable)

X

xsecGrid (ExoTransmitOpacity property) (HDF5Opacity property) (InterpolatingOpacity property) (PickleOpacity property)